chore: restore .claude commands, agents, helpers & skills (lost in 1df208d)

Restores the entire .claude/ infrastructure that was accidentally deleted
in commit 1df208d ('feat(timeline): add pulse animation for in-flight drag
mutations'). Recovered via git checkout 1df208d^.

Restored:
- .claude/commands/ (gitlooper, sparc/, github/, automation/, monitoring/,
  optimization/, hooks/, plan, implement, research, review, perf, visualaudit)
- .claude/agents/ (core/, github/, sparc/, v3/, swarm/, templates/, ...)
- .claude/helpers/ (41 scripts incl. hook-handler.cjs, statusline.cjs)
- .claude/skills/ (20 skills incl. sparc-methodology, github-*, v3-*)
- .claude/settings.json (hooks configuration)

Also updated all CapaKraken → Nexus references in affected command files.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

.claude/commands/github/repo-analyze.md

@@ -0,0 +1,28 @@
+# repo-analyze
+
+Deep analysis of GitHub repository with AI insights.
+
+## Usage
+
+```bash
+npx claude-flow github repo-analyze [options]
+```
+
+## Options
+
+- `--repository <owner/repo>` - Repository to analyze
+- `--deep` - Enable deep analysis
+- `--include <areas>` - Include specific areas (issues, prs, code, commits)
+
+## Examples
+
+```bash
+# Basic analysis
+npx claude-flow github repo-analyze --repository myorg/myrepo
+
+# Deep analysis
+npx claude-flow github repo-analyze --repository myorg/myrepo --deep
+
+# Specific areas
+npx claude-flow github repo-analyze --repository myorg/myrepo --include issues,prs
+```