chore: restore .claude commands, agents, helpers & skills (lost in 1df208d)

Restores the entire .claude/ infrastructure that was accidentally deleted
in commit 1df208d ('feat(timeline): add pulse animation for in-flight drag
mutations'). Recovered via git checkout 1df208d^.

Restored:
- .claude/commands/ (gitlooper, sparc/, github/, automation/, monitoring/,
  optimization/, hooks/, plan, implement, research, review, perf, visualaudit)
- .claude/agents/ (core/, github/, sparc/, v3/, swarm/, templates/, ...)
- .claude/helpers/ (41 scripts incl. hook-handler.cjs, statusline.cjs)
- .claude/skills/ (20 skills incl. sparc-methodology, github-*, v3-*)
- .claude/settings.json (hooks configuration)

Also updated all CapaKraken → Nexus references in affected command files.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

.claude/commands/sparc/memory-manager.md

@@ -0,0 +1,61 @@
+# SPARC Memory Manager Mode
+
+## Purpose
+
+Knowledge management with Memory tools for persistent insights.
+
+## Activation
+
+### Option 1: Using MCP Tools (Preferred in Claude Code)
+
+```javascript
+mcp__claude-flow__sparc_mode {
+  mode: "memory-manager",
+  task_description: "organize project knowledge",
+  options: {
+    namespace: "project",
+    auto_organize: true
+  }
+}
+```
+
+### Option 2: Using NPX CLI (Fallback when MCP not available)
+
+```bash
+# Use when running from terminal or MCP tools unavailable
+npx claude-flow sparc run memory-manager "organize project knowledge"
+
+# For alpha features
+npx claude-flow@alpha sparc run memory-manager "organize project knowledge"
+```
+
+### Option 3: Local Installation
+
+```bash
+# If claude-flow is installed locally
+./claude-flow sparc run memory-manager "organize project knowledge"
+```
+
+## Core Capabilities
+
+- Knowledge organization
+- Information retrieval
+- Context management
+- Insight preservation
+- Cross-session persistence
+
+## Memory Strategies
+
+- Hierarchical organization
+- Tag-based categorization
+- Temporal tracking
+- Relationship mapping
+- Priority management
+
+## Knowledge Operations
+
+- Store critical insights
+- Retrieve relevant context
+- Update knowledge base
+- Merge related information
+- Archive obsolete data